Root reader 2d software

Number of roots at the 84th percentile of a sorted list of root counts from all horizontal cross-sectional slices through the whole root system. Median number of roots from root counts taken from all horizontal cross-sectional slices through the whole root system.

Number of root tips in the whole root system based on root voxels in the skeleton that have only one connected neighbor root voxel. Total root system length based on the polyline estimation technique on root voxels in the root skeleton. Total root system surface area based on root voxel counts that are 6-connected to a background voxel.

It incorporates several pre-processing, processing and analysis features into a single intuitive and easy to use interface. RootReader2D has been expanded to perform lateral root counts from selected roots and capabilities to work with width class groups and branching angles are currently being added.

It has been adapted to work roots systems that are grown in gellan gum, sand, agarose plate, and paper pouch growth systems. Source: Clark et al. The first command-line argument, -m , compiles the Java source code i. Any errors in the Java code will be made known during this step. All errors must be fixed before continuing. The second command-line argument, -j , bundles the.

Use the third command-line argument, -r , to run the newly compiled and bundled jar file. You must have compiled the Java files and bundled the class files into a jar before running.